Transcript: ENSDART00000170154.2 smtnl1-202

Description

smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]

Location

About this transcript

This transcript has 5 exons, is annotated with 17 domains and features, is associated with 400 variant alleles and maps to 175 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000060479.6	smtnl1-201	1344	401aa	ENSDARP00000060478.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5CZV1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000170154.2	smtnl1-202	976	302aa	ENSDARP00000130854.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 976 bps, Translation length: 302 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000170154.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.