Transcript: ENSDART00000170001.3 vps54-204

Description

VPS54 subunit of GARP complex [Source:ZFIN;Acc:ZDB-GENE-081022-176]

Location

About this transcript

This transcript has 22 exons, is annotated with 15 domains and features, is associated with 778 variant alleles and maps to 340 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000170001.3	vps54-204	8053	1031aa	ENSDARP00000138816.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000165505.2	vps54-202	3235	998aa	ENSDARP00000131039.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000167536.2	vps54-203	2510	799aa	ENSDARP00000133406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000161029.2	vps54-201	1589	170aa	ENSDARP00000136610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 22, Coding exons: 21, Transcript length: 8,053 bps, Translation length: 1,031 residues

Version

ENSDART00000170001.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.