Transcript: ENSDART00000169782.3 shank2a-202

Description

SH3 and multiple ankyrin repeat domains 2a [Source:ZFIN;Acc:ZDB-GENE-120215-55]

Gene Synonyms

si:ch1073-450f2.1

Location

About this transcript

This transcript has 10 exons, is annotated with 21 domains and features, is associated with 272 variant alleles and maps to 69 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000174109.2	shank2a-203	4367	1306aa	ENSDARP00000143051.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1L1QZC9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000159950.2	shank2a-201	2622	873aa	ENSDARP00000141304.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2L938	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000169782.3	shank2a-202	1369	387aa	ENSDARP00000130491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ICT7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000183249.1	shank2a-204	348	115aa	ENSDARP00000144767.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PY25	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,369 bps, Translation length: 387 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000169782.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

RNA-Seq supported partial