Transcript: ENSDART00000169566.2 bco1-203

Description

beta-carotene oxygenase 1 [Source:ZFIN;Acc:ZDB-GENE-010508-1]

Gene Synonyms

bcdo, bcdo1, bcmo1, bcmo1a, bcox

Location

Chromosome 7: 65,261,576-65,283,290 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 3 domains and features, is associated with 3 variant alleles and maps to 109 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104256.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000168388.2	bco1-202	2088	565aa	ENSDARP00000135082.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IH96	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000162471.2	bco1-201	1790	516aa	ENSDARP00000137596.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZTS0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000169566.2	bco1-203	824	275aa	ENSDARP00000136395.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IPQ5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 824 bps, Translation length: 275 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000169566.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000169566.2 bco1-203

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Transcript: ENSDART00000169566.2 bco1-203

Summary

About Us

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