Transcript: ENSDART00000169070.2 LRIG1-204

Description

leucine-rich repeats and immunoglobulin-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-031113-23]

Location

Chromosome 11: 16,332,824-16,336,886 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 178 variant alleles and maps to 17 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000075625.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000115085.4	LRIG1-203	7283	1022aa	ENSDARP00000098283.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179925.1	LRIG1-205	2997	998aa	ENSDARP00000147892.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000180981.1	LRIG1-206	2997	998aa	ENSDARP00000147144.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000165121.2	LRIG1-201	416	138aa	ENSDARP00000141913.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000169070.2	LRIG1-204	921	165aa	ENSDARP00000138833.1	Nonsense mediated decay	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000161129.2	LRIG1-202	775	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 921 bps, Translation length: 165 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000169070.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000169070.2 LRIG1-204

Summary

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Transcript: ENSDART00000169070.2 LRIG1-204

Summary

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