Transcript: ENSDART00000168958.2 sec24c-204

Description

SEC24 homolog C, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-030131-4487]

Location

Chromosome 12: 35,570,642-35,582,521 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 596 variant alleles and maps to 7 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103516.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162175.2	sec24c-202	5678	1248aa	ENSDARP00000135644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMX2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000167933.2	sec24c-203	4239	1300aa	ENSDARP00000130259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IAZ9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000168958.2	sec24c-204	484	103aa	ENSDARP00000131456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000160336.2	sec24c-201	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 484 bps, Translation length: 103 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000168958.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000168958.2 sec24c-204

Summary

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Transcript: ENSDART00000168958.2 sec24c-204

Summary

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