protein tyrosine phosphatase receptor type Fa [Source:ZFIN;Acc:ZDB-GENE-020107-2]
Chromosome 6: 3,166,941-3,273,647 forward strand.
This transcript has 21 exons, is annotated with 57 domains and features, is associated with 1640 variant alleles and maps to 169 oligo probes.
This transcript is a product of gene ENSDARG00000103479.2 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSDART00000171014.2 | PTPRF-205 | 8712 | 1914aa | ENSDARP00000138975.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8M9PLT7 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSDART00000183862.1 | PTPRF-204 | 8750 | 1897aa | ENSDARP00000145646.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSDART00000191485.1 | PTPRF-206 | 8738 | 1893aa | ENSDARP00000145445.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSDART00000186750.1 | PTPRF-203 | 8432 | 1791aa | ENSDARP00000154553.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8M9QA48 | - |
| ENSDART00000181271.1 | PTPRF-208 | 5988 | 1893aa | ENSDARP00000150663.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSDART00000183181.1 | PTPRF-207 | 5682 | 1791aa | ENSDARP00000155993.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8M9QA48 | - |
| ENSDART00000168912.2 | PTPRF-201 | 4041 | 1186aa | ENSDARP00000140769.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, |
| ENSDART00000161714.2 | PTPRF-202 | 747 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - |