Transcript: ENSDART00000168658.3 IRX3-202

Description

iroquois homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-991119-5]

Location

About this transcript

This transcript has 2 exons, is associated with 82 variant alleles and maps to 195 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162850.3	IRX3-201	1848	454aa	ENSDARP00000139882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90Z68	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179004.2	IRX3-203	4893	450aa	ENSDARP00000143874.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000168658.3	IRX3-202	2628	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,628 bps,

Version

ENSDART00000168658.3

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.