Transcript: ENSDART00000168647.2 sparcl1-202

Description

SPARC-like 1 [Source:ZFIN;Acc:ZDB-GENE-060130-6]

Gene Synonyms

SPARCL1, sparcl

Location

Chromosome 1: 37,391,195-37,400,053 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 2 variant alleles and maps to 15 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074989.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000083593.6	sparcl1-201	2310	606aa	ENSDARP00000078028.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DJ32	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191986.1	sparcl1-204	4166	606aa	ENSDARP00000147099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DJ32	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000168647.2	sparcl1-202	801	246aa	ENSDARP00000135380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IIF9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000171672.2	sparcl1-203	752	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 801 bps, Translation length: 246 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000168647.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000168647.2 sparcl1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000168647.2 sparcl1-202

Summary

About Us

Get help

Our sister sites

Follow us