Transcript: ENSDART00000168041.2 hoxa9a-202

Description

homeobox A9a [Source:ZFIN;Acc:ZDB-GENE-000823-1]

Gene Synonyms

fd07f09, hoxx9, wu:fd07f09, z-10, zgc:110505

Location

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 5 variant alleles and maps to 301 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000168041.2	hoxa9a-202	1752	250aa	ENSDARP00000140324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GSB0 Q9PWL6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000166129.2	hoxa9a-201	926	250aa	ENSDARP00000139889.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GSB0 Q9PWL6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,752 bps, Translation length: 250 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9PWL6

Version

ENSDART00000168041.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.