Transcript: ENSDART00000167886.2 col27a1b-202

Description

collagen, type XXVII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-100119-2]

Location

Chromosome 5: 65,180,792-65,262,260 reverse strand.

About this transcript

This transcript has 51 exons, is annotated with 45 domains and features, is associated with 2167 variant alleles and maps to 168 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000099930.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000164649.2	col27a1b-201	3993	1330aa	ENSDARP00000134161.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000167886.2	col27a1b-202	3251	1083aa	ENSDARP00000139343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 51, Coding exons: 51, Transcript length: 3,251 bps, Translation length: 1,083 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000167886.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000167886.2 col27a1b-202

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Transcript: ENSDART00000167886.2 col27a1b-202

Summary

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