Transcript: ENSDART00000167843.2 rbm5-203

Description

RNA binding motif protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-3022]

Gene Synonyms

wu:fc25a08, wu:fe06f12

Location

Chromosome 6: 53,273,836-53,279,930 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 180 variant alleles and maps to 14 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000098280.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000157621.2	rbm5-201	2499	832aa	ENSDARP00000136127.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KUM0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172615.2	rbm5-205	1319	184aa	ENSDARP00000137187.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6H8S5	-
ENSDART00000165036.2	rbm5-202	1084	302aa	ENSDARP00000139300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2L3H6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000167843.2	rbm5-203	524	70aa	ENSDARP00000135414.1	Nonsense mediated decay	X1WER7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000170084.2	rbm5-204	2323	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 524 bps, Translation length: 70 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000167843.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000167843.2 rbm5-203

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Transcript: ENSDART00000167843.2 rbm5-203

Summary

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