Transcript: ENSDART00000167842.2 si:dkey-72l17.5-203

Description

si:dkey-72l17.5 [Source:ZFIN;Acc:ZDB-GENE-070424-250]

Location

Chromosome 4: 31,943,831-31,993,240 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 41 domains and features, is associated with 189 variant alleles and maps to 690 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104412.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000167842.2	si:dkey-72l17.5-203	3726	1121aa	ENSDARP00000132781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000162521.2	si:dkey-72l17.5-201	3069	1022aa	ENSDARP00000137000.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000171924.2	si:dkey-72l17.5-204	712	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
ENSDART00000164722.2	si:dkey-72l17.5-202	452	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,726 bps, Translation length: 1,121 residues

Version

ENSDART00000167842.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000167842.2 si:dkey-72l17.5-203

Summary

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Transcript: ENSDART00000167842.2 si:dkey-72l17.5-203

Summary

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