Transcript: ENSDART00000167332.2 hamp-201

Description

hepcidin antimicrobial peptide [Source:ZFIN;Acc:ZDB-GENE-050726-1]

Location

About this transcript

This transcript has 3 exons, is annotated with 12 domains and features, is associated with 284 variant alleles and maps to 204 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000167332.2	hamp-201	675	91aa	ENSDARP00000131567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7T273	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000168861.2	hamp-202	670	90aa	ENSDARP00000130038.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1P6E9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 675 bps, Translation length: 91 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7T273

Version

ENSDART00000167332.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.