Transcript: ENSDART00000167236.2 si:ch211-215p11.1-205

Description

si:ch211-215p11.1 [Source:ZFIN;Acc:ZDB-GENE-060531-33]

Location

Chromosome 4: 39,992,253-40,008,579 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 39 domains and features, is associated with 57 variant alleles and maps to 844 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104850.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000167236.2	si:ch211-215p11.1-205	3524	1103aa	ENSDARP00000132013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IG99	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000165574.2	si:ch211-215p11.1-204	3324	1092aa	ENSDARP00000140120.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IX62	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000171888.2	si:ch211-215p11.1-206	3150	1034aa	ENSDARP00000141101.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IZB5	-
ENSDART00000160459.2	si:ch211-215p11.1-203	716	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,524 bps, Translation length: 1,103 residues

Version

ENSDART00000167236.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000167236.2 si:ch211-215p11.1-205

Summary

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Transcript: ENSDART00000167236.2 si:ch211-215p11.1-205

Summary

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