Transcript: ENSDART00000167176.2 SLIT1-202

Description

slit homolog 1b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-4]

Location

Chromosome 22: 34,847,629-34,872,533 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 87 domains and features, is associated with 345 variant alleles and maps to 65 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000099446.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000188330.1	SLIT1-203	5117	1532aa	ENSDARP00000150065.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000169217.3	SLIT1-204	4839	1531aa	ENSDARP00000139567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IU60	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000165142.2	SLIT1-201	2468	813aa	ENSDARP00000131148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000167176.2	SLIT1-202	1919	640aa	ENSDARP00000132056.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,919 bps, Translation length: 640 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000167176.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000167176.2 SLIT1-202

Summary

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Transcript: ENSDART00000167176.2 SLIT1-202

Summary

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