Transcript: ENSDART00000166988.2 LSM2-202

Description

si:ch73-14h10.2 [Source:ZFIN;Acc:ZDB-GENE-141222-67]

Location

Chromosome 6: 28,209,089-28,209,906 forward strand.

About this transcript

This transcript has 4 exons, is associated with 350 variant alleles and maps to 151 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103066.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000190509.1	LSM2-206	4736	95aa	ENSDARP00000156037.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RKP8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171377.2	LSM2-203	812	76aa	ENSDARP00000130821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000166988.2	LSM2-202	547	70aa	ENSDARP00000131633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000167389.2	LSM2-204	487	70aa	ENSDARP00000131699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000171216.2	LSM2-205	472	34aa	ENSDARP00000140740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000164466.2	LSM2-201	348	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 547 bps, Translation length: 70 residues

Version

ENSDART00000166988.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000166988.2 LSM2-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000166988.2 LSM2-202

Summary

About Us

Get help

Our sister sites

Follow us