Transcript: ENSDART00000166710.2 lrch2-203

Description

leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-080114-1]

Gene Synonyms

sb:eu904

Location

Chromosome 5: 37,132,020-37,157,510 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 1012 variant alleles and maps to 116 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000075580.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112312.4	lrch2-201	1842	613aa	ENSDARP00000099188.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RBY2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000185110.1	lrch2-204	1713	570aa	ENSDARP00000152823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PXM7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000158614.2	lrch2-202	932	311aa	ENSDARP00000135081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMK7	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000166710.2	lrch2-203	643	214aa	ENSDARP00000136443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ILN5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 643 bps, Translation length: 214 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000166710.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000166710.2 lrch2-203

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Transcript: ENSDART00000166710.2 lrch2-203

Summary

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