Transcript: ENSDART00000166607.2 RAPGEF4-201

Description

zgc:171558 [Source:ZFIN;Acc:ZDB-GENE-080219-4]

Gene Synonyms

si:ch211-114n24.2

Location

About this transcript

This transcript has 30 exons, is annotated with 45 domains and features, is associated with 1619 variant alleles and maps to 133 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166607.2	RAPGEF4-201	5912	1005aa	ENSDARP00000135639.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IM06	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000111024.4	RAPGEF4-203	2184	427aa	ENSDARP00000098635.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QCZ6	-
ENSDART00000151694.2	RAPGEF4-202	534	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 30, Coding exons: 30, Transcript length: 5,912 bps, Translation length: 1,005 residues

Version

ENSDART00000166607.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]