Transcript: ENSDART00000166533.2 pcdh1a6-203

Description

protocadherin 1 alpha 6 [Source:ZFIN;Acc:ZDB-GENE-050203-2]

Gene Synonyms

DrPcdh1ab1, DrPcdh1ab4, pcdha3

Location

About this transcript

This transcript has 4 exons, is annotated with 61 domains and features, is associated with 1383 variant alleles and maps to 268 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166533.2	pcdh1a6-203	5299	939aa	ENSDARP00000138315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I6LC33	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000168604.2	pcdh1a6-204	1928	184aa	ENSDARP00000131141.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0N4STS2	-
ENSDART00000123648.3	pcdh1a6-202	1813	129aa	ENSDARP00000110356.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QU02	-
ENSDART00000100599.3	pcdh1a6-201	723	240aa	ENSDARP00000091372.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QHA0	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 5,299 bps, Translation length: 939 residues

Version

ENSDART00000166533.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.