Transcript: ENSDART00000165800.2 zpax4-202

Description

zona pellucida protein AX 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6199]

Gene Synonyms

fi33e12, fi38e01, si:dkey-19b23.11, wu:fi33e12, wu:fi38e01

Location

About this transcript

This transcript has 2 exons, is associated with 141 variant alleles and maps to 30 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000111719.4	zpax4-201	2716	833aa	ENSDARP00000099884.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R4N4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000169750.2	zpax4-203	661	189aa	ENSDARP00000139719.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IUG9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000165800.2	zpax4-202	828	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000170881.2	zpax4-204	661	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 828 bps,

Version

ENSDART00000165800.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.