Transcript: ENSDART00000165586.2 PDLIM5-201

Description

PDZ and LIM domain 5a [Source:ZFIN;Acc:ZDB-GENE-040718-401]

Location

Chromosome 5: 7,771,148-7,844,265 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 1723 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000101777.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162626.2	PDLIM5-205	2944	551aa	ENSDARP00000135287.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IN44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191910.1	PDLIM5-204	4208	326aa	ENSDARP00000148644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000157661.2	PDLIM5-202	3781	332aa	ENSDARP00000135718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QDR0	-
ENSDART00000158374.2	PDLIM5-203	1659	551aa	ENSDARP00000132622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IN44	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000165586.2	PDLIM5-201	546	128aa	ENSDARP00000133286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 546 bps, Translation length: 128 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000165586.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000165586.2 PDLIM5-201

Summary

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Transcript: ENSDART00000165586.2 PDLIM5-201

Summary

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