Transcript: ENSDART00000165580.2 si:ch211-241j8.2-202

Description

si:ch211-241j8.2 [Source:ZFIN;Acc:ZDB-GENE-141222-75]

Location

Chromosome 9: 52,613,821-52,624,373 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 13 domains and features, is associated with 509 variant alleles and maps to 163 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000101774.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000165580.2	si:ch211-241j8.2-202	1850	453aa	ENSDARP00000139474.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000164769.2	si:ch211-241j8.2-201	1517	449aa	ENSDARP00000139910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000166266.2	si:ch211-241j8.2-203	505	113aa	ENSDARP00000141655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000168753.2	si:ch211-241j8.2-204	413	65aa	ENSDARP00000136218.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 1,850 bps, Translation length: 453 residues

Version

ENSDART00000165580.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000165580.2 si:ch211-241j8.2-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000165580.2 si:ch211-241j8.2-202

Summary

About Us

Get help

Our sister sites

Follow us