Transcript: ENSDART00000165253.2 myom1b-203

Description

myomesin 1b [Source:ZFIN;Acc:ZDB-GENE-080416-2]

Location

Chromosome 7: 71,688,710-71,758,416 reverse strand.

About this transcript

This transcript has 36 exons, is annotated with 74 domains and features, is associated with 1159 variant alleles and maps to 136 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104836.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166724.3	myom1b-204	5353	1632aa	ENSDARP00000133738.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IGQ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000165253.2	myom1b-203	5984	1458aa	ENSDARP00000138459.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IUZ8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000161067.3	myom1b-201	744	198aa	ENSDARP00000142563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LH33	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000162609.2	myom1b-202	766	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 36, Coding exons: 35, Transcript length: 5,984 bps, Translation length: 1,458 residues

Version

ENSDART00000165253.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000165253.2 myom1b-203

Summary

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Transcript: ENSDART00000165253.2 myom1b-203

Summary

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