Transcript: ENSDART00000165197.2 shoc1-201

Description

shortage in chiasmata 1 [Source:ZFIN;Acc:ZDB-GENE-141222-97]

Gene Synonyms

si:ch73-194c23.1

Location

Chromosome 5: 9,313,191-9,332,076 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 2 domains and features, is associated with 646 variant alleles and maps to 57 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000101067.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000165197.2	shoc1-201	1160	387aa	ENSDARP00000132701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IGT6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000170557.2	shoc1-202	1041	347aa	ENSDARP00000131751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IES5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,160 bps, Translation length: 387 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000165197.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000165197.2 shoc1-201

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Transcript: ENSDART00000165197.2 shoc1-201

Summary

About Us

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