Transcript: ENSDART00000165116.2 ckap5-203

Description

cytoskeleton associated protein 5 [Source:ZFIN;Acc:ZDB-GENE-051120-174]

Gene Synonyms

im:7143385, wu:fb14c01, wu:fb59e03, wu:fi33f02, zgc:123012

Location

Chromosome 25: 13,745,551-13,790,064 reverse strand.

About this transcript

This transcript has 45 exons, is annotated with 40 domains and features, is associated with 538 variant alleles and maps to 240 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000102674.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000171461.2	ckap5-205	6161	2004aa	ENSDARP00000139073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQI9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000165116.2	ckap5-203	6248	2033aa	ENSDARP00000130881.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IA93	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000167742.2	ckap5-204	3175	990aa	ENSDARP00000139209.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IU27	-
ENSDART00000163512.2	ckap5-202	3185	149aa	ENSDARP00000130905.1	Nonsense mediated decay	A0A0R4IDK3	-
ENSDART00000161341.2	ckap5-201	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 45, Coding exons: 44, Transcript length: 6,248 bps, Translation length: 2,033 residues

Version

ENSDART00000165116.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000165116.2 ckap5-203

Summary

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Transcript: ENSDART00000165116.2 ckap5-203

Summary

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