Transcript: ENSDART00000164974.3 ebf3a-203

Description

EBF transcription factor 1a [Source:NCBI gene;Acc:565310]

Gene Synonyms

ebf3, zgc:158829

Location

Chromosome 14: 35,013,656-35,039,454 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 842 variant alleles and maps to 8 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000099849.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158634.2	ebf3a-201	1836	611aa	ENSDARP00000139406.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWI1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000172171.2	ebf3a-205	2647	591aa	ENSDARP00000139648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWI1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000170631.2	ebf3a-204	1782	593aa	ENSDARP00000139773.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWI1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000163465.2	ebf3a-202	862	53aa	ENSDARP00000136599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IKZ7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000164974.3	ebf3a-203	636	28aa	ENSDARP00000142321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LGE2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 636 bps, Translation length: 28 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000164974.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000164974.3 ebf3a-203

Summary

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Transcript: ENSDART00000164974.3 ebf3a-203

Summary

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