Transcript: ENSDART00000164547.2 fnta-202

Description

farnesyltransferase, CAAX box, subunit alpha [Source:ZFIN;Acc:ZDB-GENE-030131-866]

Gene Synonyms

im:6909421, wu:fb51d12, wu:fz92f09, zgc:158397

Location

About this transcript

This transcript has 2 exons, is annotated with 5 domains and features, is associated with 229 variant alleles and maps to 24 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158416.2	fnta-201	5246	374aa	ENSDARP00000133663.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1L1V1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171153.2	fnta-204	1037	319aa	ENSDARP00000140016.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000164547.2	fnta-202	327	109aa	ENSDARP00000134786.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000165830.2	fnta-203	1253	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 327 bps, Translation length: 109 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000164547.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.