Transcript: ENSDART00000164453.2 PUM1-201

Description

pumilio RNA-binding family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2074]

Location

Chromosome 19: 43,037,658-43,084,065 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 45 domains and features, is associated with 569 variant alleles and maps to 306 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000099256.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000168263.2	PUM1-205	3560	1152aa	ENSDARP00000140793.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWL6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000164453.2	PUM1-201	3228	1042aa	ENSDARP00000131349.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000184771.1	PUM1-206	1969	540aa	ENSDARP00000149400.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000165202.2	PUM1-202	399	102aa	ENSDARP00000141593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000157961.2	PUM1-203	721	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000161961.2	PUM1-204	660	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 3,228 bps, Translation length: 1,042 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000164453.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000164453.2 PUM1-201

Summary

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Transcript: ENSDART00000164453.2 PUM1-201

Summary

About Us

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