Transcript: ENSDART00000164337.2 cspg5b-202

Description

chondroitin sulfate proteoglycan 5b [Source:ZFIN;Acc:ZDB-GENE-060503-368]

Gene Synonyms

si:dkeyp-114f9.4

Location

About this transcript

This transcript has 4 exons, is associated with 468 variant alleles and maps to 85 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158413.2	cspg5b-201	1907	481aa	ENSDARP00000136195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4INR6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000170479.2	cspg5b-203	2485	540aa	ENSDARP00000135714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMK4	-
ENSDART00000164337.2	cspg5b-202	1627	55aa	ENSDARP00000135423.1	Nonsense mediated decay	A0A0R4INA0	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 1,627 bps, Translation length: 55 residues

Version

ENSDART00000164337.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.