Transcript: ENSDART00000164282.1 gpa33a-201

Description

glycoprotein A33 (transmembrane), paralog a [Source:ZFIN;Acc:ZDB-GENE-080229-4]

Gene Synonyms

sc:d0144, si:zfos-1011f11.1

Location

Chromosome 1: 65,705-71,494 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 154 variant alleles and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000100223.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166954.1	gpa33a-204	2069	378aa	ENSDARP00000141803.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IZS0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000165650.2	gpa33a-203	2737	449aa	ENSDARP00000135435.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IIH3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000165267.1	gpa33a-202	2734	464aa	ENSDARP00000138102.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IP61	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000171963.1	gpa33a-206	887	209aa	ENSDARP00000138044.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0J9YJG0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000164282.1	gpa33a-201	3548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000167148.1	gpa33a-205	751	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 3,548 bps,

Version

ENSDART00000164282.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000164282.1 gpa33a-201

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Transcript: ENSDART00000164282.1 gpa33a-201

Summary

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