Transcript: ENSDART00000164116.3 ccl27a-202

Description

chemokine (C-C motif) ligand 27a [Source:ZFIN;Acc:ZDB-GENE-000208-28]

Location

About this transcript

This transcript has 3 exons, is annotated with 10 domains and features, is associated with 407 variant alleles and maps to 70 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000081457.4	ccl27a-201	500	93aa	ENSDARP00000075898.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R6S5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000164116.3	ccl27a-202	505	94aa	ENSDARP00000137864.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IRX2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 505 bps, Translation length: 94 residues

Version

ENSDART00000164116.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.