Transcript: ENSDART00000163766.2 PHOX2B-201

Description

paired like homeobox 2Bb [Source:ZFIN;Acc:ZDB-GENE-050407-3]

Location

About this transcript

This transcript has 3 exons, is annotated with 14 domains and features, is associated with 49 variant alleles and maps to 167 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000163766.2	PHOX2B-201	2197	284aa	ENSDARP00000130156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5I7G4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000106333.5	PHOX2B-203	3956	284aa	ENSDARP00000097111.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5I7G4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000170277.2	PHOX2B-202	1004	206aa	ENSDARP00000137086.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,197 bps, Translation length: 284 residues

Version

ENSDART00000163766.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.