Transcript: ENSDART00000163546.2 HOXA1-201

Description

homeobox A1a [Source:ZFIN;Acc:ZDB-GENE-000823-5]

Location

About this transcript

This transcript has 3 exons, is annotated with 15 domains and features, is associated with 5 variant alleles and maps to 257 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000167757.2	HOXA1-202	1441	329aa	ENSDARP00000133272.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q98SI1-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000163546.2	HOXA1-201	885	294aa	ENSDARP00000133812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 885 bps, Translation length: 294 residues

Version

ENSDART00000163546.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.