Transcript: ENSDART00000163104.2 42sp43-202

Description

P43 5S RNA-binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-6124]

Location

About this transcript

This transcript has 9 exons, is annotated with 39 domains and features, is associated with 40 variant alleles and maps to 248 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000163104.2	42sp43-202	1475	366aa	ENSDARP00000141494.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000164644.2	42sp43-203	1195	300aa	ENSDARP00000136957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000167480.2	42sp43-204	909	257aa	ENSDARP00000133117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000158321.2	42sp43-201	783	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,475 bps, Translation length: 366 residues

Version

ENSDART00000163104.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.