Transcript: ENSDART00000162858.2 lmbrd1-203

Description

LMBR1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041212-36]

Location

About this transcript

This transcript has 16 exons, is annotated with 17 domains and features, is associated with 1138 variant alleles and maps to 346 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000162858.2	lmbrd1-203	2337	541aa	ENSDARP00000140434.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000157524.2	lmbrd1-201	740	247aa	ENSDARP00000140960.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000160193.2	lmbrd1-202	914	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
ENSDART00000164380.2	lmbrd1-204	353	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,337 bps, Translation length: 541 residues

Version

ENSDART00000162858.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.