Transcript: ENSDART00000162750.2 ca5a-203

Description

carbonic anhydrase Va [Source:ZFIN;Acc:ZDB-GENE-080220-57]

Gene Synonyms

ca5, zgc:171653

Location

Chromosome 25: 12,798,270-12,809,361 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 9 domains and features, is associated with 438 variant alleles and maps to 102 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000101778.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162750.2	ca5a-203	1564	310aa	ENSDARP00000132972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8KB74	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000157629.2	ca5a-201	878	292aa	ENSDARP00000131478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0J9YJ49	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000169717.2	ca5a-204	814	178aa	ENSDARP00000131531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IDH9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000158787.2	ca5a-202	455	152aa	ENSDARP00000133145.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IFK1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,564 bps, Translation length: 310 residues

Version

ENSDART00000162750.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000162750.2 ca5a-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000162750.2 ca5a-203

Summary

About Us

Get help

Our sister sites

Follow us