Transcript: ENSDART00000162687.2 stambpb-203

Description

STAM binding protein b [Source:ZFIN;Acc:ZDB-GENE-051127-31]

Gene Synonyms

zgc:123247

Location

Chromosome 8: 52,530,941-52,536,439 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 1 variant allele and maps to 30 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000086906.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000170360.2	stambpb-204	2394	421aa	ENSDARP00000135522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IIS6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000127729.3	stambpb-201	2093	418aa	ENSDARP00000110215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QW91	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000162687.2	stambpb-203	493	96aa	ENSDARP00000139750.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IUL5	-
ENSDART00000170745.2	stambpb-205	755	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000159269.2	stambpb-202	735	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 493 bps, Translation length: 96 residues

Version

ENSDART00000162687.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000162687.2 stambpb-203

Summary

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Transcript: ENSDART00000162687.2 stambpb-203

Summary

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