Transcript: ENSDART00000162681.2 rbfox3a-202

Description

RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1]

Gene Synonyms

rbfox3

Location

Chromosome 12: 33,151,246-33,251,465 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 18 domains and features, is associated with 439 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000010083.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000175712.2	rbfox3a-203	1589	373aa	ENSDARP00000144068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286YA75	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000162681.2	rbfox3a-202	7208	326aa	ENSDARP00000138305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IT73	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000153146.3	rbfox3a-201	1104	367aa	ENSDARP00000127143.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JA78	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 7,208 bps, Translation length: 326 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000162681.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

not organism-supported

Transcript: ENSDART00000162681.2 rbfox3a-202

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Transcript: ENSDART00000162681.2 rbfox3a-202

Summary

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