Transcript: ENSDART00000162669.2 SLC4A5-201

Description

si:ch211-48m9.1 [Source:ZFIN;Acc:ZDB-GENE-060531-64]

Location

Chromosome 10: 44,824,072-44,901,444 forward strand.

About this transcript

This transcript has 25 exons, is annotated with 46 domains and features, is associated with 1934 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104387.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000160976.2	SLC4A5-202	3427	1090aa	ENSDARP00000135523.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IJZ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000162669.2	SLC4A5-201	6115	1056aa	ENSDARP00000138984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IUF3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000159370.2	SLC4A5-203	3123	1040aa	ENSDARP00000138580.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IV83	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 25, Coding exons: 24, Transcript length: 6,115 bps, Translation length: 1,056 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000162669.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000162669.2 SLC4A5-201

Summary

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Transcript: ENSDART00000162669.2 SLC4A5-201

Summary

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