Transcript: ENSDART00000162601.2 SCN2B-203

Description

sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]

Location

About this transcript

This transcript has 6 exons, is associated with 833 variant alleles and maps to 108 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162807.2	SCN2B-202	918	230aa	ENSDARP00000131257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q06W28	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162601.2	SCN2B-203	2448	223aa	ENSDARP00000138751.1	Nonsense mediated decay	-	-
ENSDART00000161274.2	SCN2B-201	820	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,448 bps, Translation length: 223 residues

Version

ENSDART00000162601.2

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.