Transcript: ENSDART00000162562.2 scmh1-202

Description

Scm polycomb group protein homolog 1 [Source:ZFIN;Acc:ZDB-GENE-070410-82]

Gene Synonyms

zgc:162582

Location

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 534 variant alleles and maps to 106 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166606.2	scmh1-203	1568	120aa	ENSDARP00000132543.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNV9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000180208.1	scmh1-205	4400	642aa	ENSDARP00000148659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000162172.2	scmh1-201	3642	587aa	ENSDARP00000131127.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000169868.2	scmh1-204	2251	707aa	ENSDARP00000135816.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162562.2	scmh1-202	864	265aa	ENSDARP00000131445.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 864 bps, Translation length: 265 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000162562.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.