Transcript: ENSDART00000162546.3 atp2a1-208

Description

ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]

Location

Chromosome 3: 26,145,013-26,154,894 forward strand.

About this transcript

This transcript has 23 exons, is annotated with 62 domains and features, is associated with 11 variant alleles and maps to 188 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000020574.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000043932.7	atp2a1-201	3390	1005aa	ENSDARP00000043931.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000129561.3	atp2a1-202	3311	994aa	ENSDARP00000109874.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q642Z0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162546.3	atp2a1-208	3041	994aa	ENSDARP00000135633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q642Z0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134647.3	atp2a1-203	1049	102aa	ENSDARP00000115435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000146979.2	atp2a1-206	502	39aa	ENSDARP00000116177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000146267.3	atp2a1-205	416	97aa	ENSDARP00000116872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000139579.3	atp2a1-204	348	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000148365.2	atp2a1-207	520	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 3,041 bps, Translation length: 994 residues

Version

ENSDART00000162546.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000162546.3 atp2a1-208

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Transcript: ENSDART00000162546.3 atp2a1-208

Summary

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