Transcript: ENSDART00000162485.2 PAX6-210

Description

paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]

Location

Chromosome 25: 15,029,041-15,049,694 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 29 domains and features, is associated with 97 variant alleles and maps to 336 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103379.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000164384.2	PAX6-202	2797	451aa	ENSDARP00000135767.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000162485.2	PAX6-210	2730	437aa	ENSDARP00000139430.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P26630-1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000165774.2	PAX6-203	1922	441aa	ENSDARP00000140503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IXU2	-
ENSDART00000161165.2	PAX6-206	1006	74aa	ENSDARP00000133480.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000165632.2	PAX6-208	933	96aa	ENSDARP00000130714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000166490.2	PAX6-204	911	114aa	ENSDARP00000138440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000159342.2	PAX6-205	876	113aa	ENSDARP00000130972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000159490.2	PAX6-201	860	17aa	ENSDARP00000133859.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000172538.2	PAX6-207	699	138aa	ENSDARP00000138421.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000169876.2	PAX6-209	306	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,730 bps, Translation length: 437 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P26630

Version

ENSDART00000162485.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000162485.2 PAX6-210

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Transcript: ENSDART00000162485.2 PAX6-210

Summary

About Us

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