Transcript: ENSDART00000162445.2 HMGXB3-201

Description

HMG box domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-111012-1]

Location

About this transcript

This transcript has 21 exons, is annotated with 16 domains and features, is associated with 720 variant alleles and maps to 115 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162445.2	HMGXB3-201	5791	1222aa	ENSDARP00000141861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FFB0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000110721.4	HMGXB3-202	3671	1222aa	ENSDARP00000099076.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FFB0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 21, Coding exons: 20, Transcript length: 5,791 bps, Translation length: 1,222 residues

Version

ENSDART00000162445.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]