Transcript: ENSDART00000162411.2 sh3d21-202

Description

SH3 domain containing 21 [Source:ZFIN;Acc:ZDB-GENE-051120-57]

Location

Chromosome 16: 35,905,031-35,938,157 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 36 domains and features, is associated with 765 variant alleles and maps to 223 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000099448.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162411.2	sh3d21-202	1986	425aa	ENSDARP00000135563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IK14	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000160608.2	sh3d21-201	751	238aa	ENSDARP00000132046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000167208.2	sh3d21-205	705	235aa	ENSDARP00000136761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000165847.2	sh3d21-204	612	204aa	ENSDARP00000141579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000164858.2	sh3d21-203	779	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 1,986 bps, Translation length: 425 residues

Version

ENSDART00000162411.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000162411.2 sh3d21-202

Summary

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Transcript: ENSDART00000162411.2 sh3d21-202

Summary

About Us

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