Transcript: ENSDART00000162406.2 ITGA4-201

Description

integrin alpha 4 [Source:ZFIN;Acc:ZDB-GENE-110411-108]

Location

About this transcript

This transcript has 19 exons, is annotated with 26 domains and features, is associated with 9 variant alleles and maps to 82 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166110.2	ITGA4-203	3388	1018aa	ENSDARP00000131563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ICS1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000176954.2	ITGA4-202	3272	1018aa	ENSDARP00000144215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ICS1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162406.2	ITGA4-201	2270	713aa	ENSDARP00000141779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,270 bps, Translation length: 713 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000162406.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]