Transcript: ENSDART00000162396.2 rrn3-202

Description

RRN3 homolog, RNA polymerase I transcription factor [Source:HGNC Symbol;Acc:HGNC:30346]

Location

About this transcript

This transcript has 18 exons, is annotated with 7 domains and features, is associated with 343 variant alleles and maps to 263 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162396.2	rrn3-202	2527	612aa	ENSDARP00000140362.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ICI5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000165414.2	rrn3-203	2356	612aa	ENSDARP00000131383.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ICI5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000161501.2	rrn3-201	803	237aa	ENSDARP00000131312.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 2,527 bps, Translation length: 612 residues

Version

ENSDART00000162396.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.