Transcript: ENSDART00000162225.2 PTPN13-201

Description

protein tyrosine phosphatase non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]

Location

Chromosome 21: 9,387,264-9,562,272 reverse strand.

About this transcript

This transcript has 49 exons, is annotated with 113 domains and features, is associated with 2822 variant alleles and maps to 505 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103699.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000168173.2	PTPN13-203	4340	1302aa	ENSDARP00000139064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000162225.2	PTPN13-201	8288	2475aa	ENSDARP00000136300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IPR0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000163874.2	PTPN13-205	7814	2317aa	ENSDARP00000139515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWH3	-
ENSDART00000167211.2	PTPN13-204	941	313aa	ENSDARP00000136911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000158790.2	PTPN13-202	420	140aa	ENSDARP00000135765.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 49, Coding exons: 48, Transcript length: 8,288 bps, Translation length: 2,475 residues

Version

ENSDART00000162225.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000162225.2 PTPN13-201

Summary

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Transcript: ENSDART00000162225.2 PTPN13-201

Summary

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