Transcript: ENSDART00000162149.2 TOP1-203

Description

DNA topoisomerase Ia [Source:ZFIN;Acc:ZDB-GENE-060616-217]

Location

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 177 variant alleles and maps to 77 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000065949.8	TOP1-201	3795	758aa	ENSDARP00000065948.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1ED17	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162149.2	TOP1-203	759	94aa	ENSDARP00000139289.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000122249.3	TOP1-202	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 759 bps, Translation length: 94 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000162149.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.